Data Mining & Computational Biology


Lab projects (click the below link to connect a project)
1. CAM (Combining Array CGH and Microarray gene expression data from multiple samples)
2. OCPID (Organ Centric Protein Interaction Database)
3.1. Paper outline & additional files - Assessment of contribution of genomic data sources to predictiong protein functions
3.2. Informative genomic data sets for the computational function predictions of Mus musculus
4. Disease Gene Identification by Integrating Domain Interactions and Mutations in the Proteins
5. Numerical Doses in LLLT and EA literatures
6. Wavelet-based Identification of DNA focal genomic aberrations
7. Disease gene search engine with evidence sentence
8. Voting based cancer module identification by combining topological and data-driven properties
9. Herb-Disease relation corpus
10. Plant corpus
11. HerDing: herb recommendation system to treat diseases using genes and chemicals.
12. A corpus for plant-chemical relationships in the biomedical domain
13. Integration of MicroRNA, mRNA, and Protein Expression Data for the Identification of Cancer-Related MicroRNAs
14. Prioritizing cancer-related microRNAs by integrating microRNA and mRNA datasets
15. An Integrative Model for Identification of Key Players of the Cancer Network
16. CGMMC : A Computational Approach to Identifying Gene-microRNA Modules in Cancer
17. An entity name normalization method for biomedical articles: application to diseases and plants
18. In silico re-identication of properties of drug target proteins
19. Phenotype corpus
20. Drug, Herbs, Health functional food and Prescription - phenotype relationship corpus
21. WIFA-Seq : Identification of cancer-driver genes in focal genomic aberrations from whole genome sequencing data
22. WIFA-X : Identification of cancer-driver genes in focal genomic aberrations from whole exome sequencing data
23. Wabico : Multi-resolution GC bias correction and its application to copy number alteration identification
24. Biomedical Named Entity Recognition Using Deep Neural Networks with Contextual Information
25. Disease gene chemical search engine with evidence sentence pairs
26. Prediction of survival and recurrence of pancreatic cancer by integrating multi-omics data