WIFA-Seq Identification of cancer-driver genes in focal genomic alterations from whole genome sequencing data

 

 
News
2018/02/26: Source codes are updated.
Introduction
It integrates whole genome sequencing data sets from multiple cancer samples and identify recurrent aberrations across multiple samples. The use of the wavelet analysis, being a multi-resolution approach, makes it possible to effectively identify focal genomic aberrations in the broadly aberrant regions.
Paper Jang, H. Hur, Y. and Lee, H. (2016) Identification of cancer-driver genes in focal genomic aberrations from whole exome sequencing data. Scientific Reports
Source codes
Source codes are available here. There are Ensembl gene annotation files for GRCh37 and GRCh38. Please refer to the manaul pdf file.
Contacts
hyunjulee at gist.ac.kr